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Title:

Source Coding Scheme for Multiple Sequence Alignments

Document type:
Konferenzbeitrag
Contribution type:
Textbeitrag / Aufsatz
Author(s):
Hanus, P.; Dingel, J.; Chalkidis, G.; Hagenauer, J.:
Pages contribution:
10
Abstract:
Abstract Rapid development of DNA sequencing technologies exponentially increases the amount of publicly available genomic data. Whole genome multiple sequence alignments represent a particularly voluminous, frequently downloaded static dataset. In this work we propose an asymmetric source coding scheme for such alignments using evolutionary prediction in combination with lossless black and white image compression. Compared to the Lempel-Ziv algorithm used so far the compression rates are...     »
Book / Congress title:
Proc. Data Compression Conference (DCC 2009)
Congress (additional information):
Snowbird, USA
Year:
2009
Quarter:
1. Quartal
Year / month:
2009-03
Month:
Mar
Pages:
183-192
Language:
en
Publication format:
Print
WWW:
http://www.lnt.ei.tum.de/frames/frame.php?language=de&nvbar=4&sdbar=5&mnfr=5
TUM Institution:
Lehrstuhl für Nachrichtentechnik
Format:
Text
Last change:
20.11.2009
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