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Shahryary, Yadollah;Symeonidi, Aikaterini;Hazarika, Rashmi R.;Denkena, Johanna;Mubeen, Talha;Hofmeister, Brigitte;van Gurp, Thomas;Colomé-Tatché, Maria;Verhoeven, Koen;Tuskan, Gerald;Schmitz, Robert J;Johannes, Frank
AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
bioRxiv
2020
Wendte, Jered M;Zhang, Yinwen;Ji, Lexiang;Shi, Xiuling;Hazarika, Rashmi R;Shahryary, Yadollah;Johannes, Frank;Schmitz, Robert J
Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
eLife
2019
8
Johannes, Frank;Schmitz, Robert J.
Spontaneous epimutations in plants
New Phytologist
2018
221
3
1253-1259
Johannes, Frank;Schmitz, Robert J.
Spontaneous epimutations in plants
New Phytologist
2018
221
3
1253-1259
Ji, Lexiang;Jordan, William T.;Shi, Xiuling;Hu, Lulu;He, Chuan;Schmitz, Robert J.
TET-mediated epimutagenesis of the Arabidopsis thaliana methylome
Nature Communications
2018
9
1
Lu, Zefu;Marand, Alexandre P.;Ricci, William A.;Ethridge, Christina L.;Zhang, Xiaoyu;Schmitz, Robert J.
The prevalence, evolution and chromatin signatures of plant regulatory elements
Nature Plants
2019
5
12
1250-1259
Hofmeister, Brigitte T.;Denkena, Johanna;Colomé-Tatché, Maria;Shahryary, Yadollah;Hazarika, Rashmi;Grimwood, Jane;Mamidi, Sujan;Jenkins, Jerry;Grabowski, Paul P.;Sreedasyam, Avinash;Shu, Shengqiang;Barry, Kerrie;Lail, Kathleen;Adam, Catherine;Lipzen, Anna;Sorek, Rotem;Kudrna, Dave;Talag, Jayson;Wing, Rod;Hall, David W.;Tuskan, Gerald A.;Schmutz, Jeremy;Johannes, Frank;Schmitz, Robert J.
The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
bioRxiv
2019
Ricci, William A.;Lu, Zefu;Ji, Lexiang;Marand, Alexandre P.;Ethridge, Christina L.;Murphy, Nathalie G.;Noshay, Jaclyn M.;Galli, Mary;Mejía-Guerra, María Katherine;Colomé-Tatché, Maria;Johannes, Frank;Rowley, M. Jordan;Corces, Victor G.;Zhai, Jixian;Scanlon, Michael J.;Buckler, Edward S.;Gallavotti, Andrea;Springer, Nathan M.;Schmitz, Robert J.;Zhang, Xiaoyu
Widespread long-range cis-regulatory elements in the maize genome
Nature Plants
2019
5
12
1237-1249
Brigitte T. Hofmeister, Johanna Denkena, Maria Colomé-Tatché, Yadollah Shahryary, Rashmi Hazarika, Jane Grimwood, Sujan Mamidi, Jerry Jenkins, Paul P. Grabowski, Avinash Sreedasyam, Shengqiang Shu, Kerrie Barry, Kathleen Lail, Catherine Adam, Anna Lipzen, Rotem Sorek, Dave Kudrna, Jayson Talag, Rod Wing, David W. Hall, Gerald A. Tuskan, Jeremy Schmutz, Frank Johannes, Robert J. Schmitz
The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
2019
Yadollah Shahryary, Aikaterini Symeonidi, Rashmi R. Hazarika, Johanna Denkena, Talha Mubeen, Brigitte Hofmeister, Thomas van Gurp, Maria Colomé-Tatché, Koen Verhoeven, Gerald Tuskan, Robert J Schmitz, Frank Johannes
AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
2019
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