A. Taudt, M. A. Nguyen, M. Heinig, F. Johannes, M. Colomé-Tatché
chromstaR: Tracking combinatorial chromatin state dynamics in space and time.
2016

L. Morgado, R. C. Jansen, F. Johannes
Learning sequence patterns of AGO-sRNA affinity from high-throughput sequencing libraries to improve in silico functional small RNA detection and classification in plants
2017

I. Kakoulidou, R. S. Piecyk, R. C. Meyer, M. Kuhlmann, C. Gutjahr, T. Altmann, F. Johannes
Parental pericentromeric methylation status drives methylome remodelling and heterosis in epigenetic hybrids
2022

T. Sellinger, F. Johannes, A. Tellier,
Improved inference of population histories by integrating genomic and epigenomic data
2023

Magri, Luca;Doan, Anh Khoa
On interpretability and proper latent decomposition of autoencoders
2022

Doan, Nguyen Anh Khoa;Polifke, Wolfgang;Magri, Luca
Auto-Encoded Reservoir Computing for Turbulence Learning
Computational Science – ICCS 2021
Springer International Publishing
2021

Racca, Alberto;Doan, Nguyen Anh Khoa;Magri, Luca
Predicting turbulent dynamics with the convolutional autoencoder echo state network
Journal of Fluid Mechanics
2023
975

Doan, Nguyen Anh Khoa;Racca, Alberto;Magri, Luca
Convolutional Autoencoder for the Spatiotemporal Latent Representation of Turbulence
Computational Science – ICCS 2023
Springer Nature Switzerland
2023

Magri, Luca;Doan, Nguyen Anh Khoa
Physics-Informed Data-Driven Prediction of Turbulent Reacting Flows with Lyapunov Analysis and Sequential Data Assimilation
Data Analysis for Direct Numerical Simulations of Turbulent Combustion
Springer International Publishing
2020

Iavarone, Salvatore;Péquin, Arthur;Chen, Zhi X.;Doan, Nguyen Anh Khoa;Swaminathan, Nedunchezhian;Parente, Alessandro
An a priori assessment of the Partially Stirred Reactor (PaSR) model for MILD combustion
Proceedings of the Combustion Institute
2021
38
4
5403-5414