Shahryary, Yadollah;Symeonidi, Aikaterini;Hazarika, Rashmi R.;Denkena, Johanna;Mubeen, Talha;Hofmeister, Brigitte;van Gurp, Thomas;Colomé-Tatché, Maria;Verhoeven, Koen;Tuskan, Gerald;Schmitz, Robert J;Johannes, Frank
AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
bioRxiv
2020

Morgado, Lionel;Johannes, Frank
Computational tools for plant small RNA detection and categorization
Briefings in Bioinformatics
2017

Wendte, Jered M;Zhang, Yinwen;Ji, Lexiang;Shi, Xiuling;Hazarika, Rashmi R;Shahryary, Yadollah;Johannes, Frank;Schmitz, Robert J
Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
eLife
2019
8

Taudt, Aaron;Colomé-Tatché, Maria;Johannes, Frank
Genetic sources of population epigenomic variation
Nature Reviews Genetics
2016
17
6
319-332

Vidalis, Amaryllis;Živković, Daniel;Wardenaar, René;Roquis, David;Tellier, Aurélien;Johannes, Frank
Methylome evolution in plants
Genome Biology
2016
17
1

Lauss, Kathrin;Wardenaar, René;Oka, Rurika;van Hulten, Marieke H. A.;Guryev, Victor;Keurentjes, Joost J. B.;Stam, Maike;Johannes, Frank
Parental DNA Methylation States Are Associated with Heterosis in Epigenetic Hybrids
Plant Physiology
2017
176
2
1627-1645

Diao, Wenwen;Mousset, Mathilde;Horsburgh, Gavin J.;Vermeulen, Cornelis J.;Johannes, Frank;van de Zande, Louis;Ritchie, Michael G.;Schmitt, Thomas;Beukeboom, Leo W.
Quantitative Trait Locus Analysis of Mating Behavior and Male Sex Pheromones in Nasonia Wasps
G3: Genes|Genomes|Genetics
2016
6
6
1549-1562

van der Graaf, Adriaan;Wardenaar, René;Neumann, Drexel A.;Taudt, Aaron;Shaw, Ruth G.;Jansen, Ritsert C.;Schmitz, Robert J.;Colomé-Tatché, Maria;Johannes, Frank
Rate, spectrum, and evolutionary dynamics of spontaneous epimutations
Proceedings of the National Academy of Sciences
2015
112
21
6676-6681

Morgado, Lionel;Preite, Veronica;Oplaat, Carla;Anava, Sarit;Ferreira de Carvalho, Julie;Rechavi, Oded;Johannes, Frank;Verhoeven, Koen J.F.
Small RNAs Reflect Grandparental Environments in Apomictic Dandelion
Molecular Biology and Evolution
2017
34
8
2035-2040

Johannes, Frank;Schmitz, Robert J.
Spontaneous epimutations in plants
New Phytologist
2018
221
3
1253-1259