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Wang, Dongxue;Eraslan, Basak;Wieland, Thomas;Hallström, Björn;Hopf, Thomas;Zolg, Daniel Paul;Zecha, Jana;Asplund, Anna;Li, Li‐hua;Meng, Chen;Frejno, Martin;Schmidt, Tobias;Schnatbaum, Karsten;Wilhelm, Mathias;Ponten, Frederik;Uhlen, Mathias;Gagneur, Julien;Hahne, Hannes;Kuster, Bernhard
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
Molecular Systems Biology
2019
15
2
Rechenberger, Julia;Samaras, Patroklos;Jarzab, Anna;Behr, Juergen;Frejno, Martin;Djukovic, Ana;Sanz, Jaime;González-Barberá, Eva M.;Salavert, Miguel;López-Hontangas, Jose Luis;Xavier, Karina B.;Debrauwer, Laurent;Rolain, Jean-Marc;Sanz, Miguel;Garcia-Garcera, Marc;Wilhelm, Mathias;Ubeda, Carles;Kuster, Bernhard
Challenges in Clinical Metaproteomics Highlighted by the Analysis of Acute Leukemia Patients with Gut Colonization by Multidrug-Resistant Enterobacteriaceae
Proteomes
2019
7
1
2
Schirle, Markus;Bantscheff, Marcus;Kuster, Bernhard
Characterization of Drug-Protein Interactions by Chemoproteomics
Proteomics for Biological Discovery
John Wiley & Sons, Inc.
2019
Reinecke, Maria;Ruprecht, Benjamin;Poser, Sandra;Wiechmann, Svenja;Wilhelm, Mathias;Heinzlmeir, Stephanie;Kuster, Bernhard;Médard, Guillaume
Chemoproteomic Selectivity Profiling of PIKK and PI3K Kinase Inhibitors
ACS Chemical Biology
2019
14
4
655-664
Seefried, Florian;Schmidt, Tobias;Reinecke, Maria;Heinzlmeir, Stephanie;Kuster, Bernhard;Wilhelm, Mathias
CiRCus: A Framework to Enable Classification of Complex High-Throughput Experiments
Journal of Proteome Research
2019
18
4
1486-1493
Meng, Chen;Basunia, Azfar;Peters, Bjoern;Gholami, Amin Moghaddas;Kuster, Bernhard;Culhane, Aedín C.
MOGSA: Integrative Single Sample Gene-set Analysis of Multiple Omics Data
Molecular & Cellular Proteomics
2019
18
8 suppl 1
S153--S168
Zecha, Jana;Meng, Chen;Zolg, Daniel Paul;Samaras, Patroklos;Wilhelm, Mathias;Kuster, Bernhard
Peptide Level Turnover Measurements Enable the Study of Proteoform Dynamics
Molecular & Cellular Proteomics
2018
17
5
974-992
Gessulat, Siegfried;Schmidt, Tobias;Zolg, Daniel Paul;Samaras, Patroklos;Schnatbaum, Karsten;Zerweck, Johannes;Knaute, Tobias;Rechenberger, Julia;Delanghe, Bernard;Huhmer, Andreas;Reimer, Ulf;Ehrlich, Hans-Christian;Aiche, Stephan;Kuster, Bernhard;Wilhelm, Mathias
Prosit: proteome-wide prediction of peptide tandem mass spectra by deep learning
Nature Methods
2019
16
6
509-518
Samaras, Patroklos;Schmidt, Tobias;Frejno, Martin;Gessulat, Siegfried;Reinecke, Maria;Jarzab, Anna;Zecha, Jana;Mergner, Julia;Giansanti, Piero;Ehrlich, Hans-Christian;Aiche, Stephan;Rank, Johannes;Kienegger, Harald;Krcmar, Helmut;Kuster, Bernhard;Wilhelm, Mathias
ProteomicsDB: a multi-omics and multi-organism resource for life science research
Nucleic Acids Research
2019
Zhang, Bing;Kuster, Bernhard
Proteomics Is Not an Island: Multi-omics Integration Is the Key to Understanding Biological Systems
Molecular & Cellular Proteomics
2019
18
8 suppl 1
S1-S4
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