Zhu, Chengsheng;Delmont, Tom O.;Vogel, Timothy M.;Bromberg, YanaFunctional Basis of Microorganism ClassificationPLOS Computational Biology2015118e1004472
Walker, Alejandro R.;Grimes, Tyler L.;Datta, Somnath;Datta, SusmitaUnraveling bacterial fingerprints of city subways from microbiome 16S gene profilesBiology Direct2018131
Bromberg, Yana;Hahn, Matthew W.;Radivojac, PredragComputational approaches to understanding the evolution of molecular functionBiocomputing 2017WORLD SCIENTIFIC2016
Goldberg, Tatyana;Rost, Burkhard;Bromberg, YanaComputational prediction shines light on type III secretion originsScientific Reports201661
Miller, Maximilian;Zhu, Chengsheng;Bromberg, Yanaclubber: removing the bioinformatics bottleneck in big data analysesJournal of Integrative Bioinformatics2017142
Zhu, Chengsheng;Miller, Maximilian;Marpaka, Srinayani;Vaysberg, Pavel;Rühlemann, Malte C;Wu, Guojun;Heinsen, Femke-Anouska;Tempel, Marie;Zhao, Liping;Lieb, Wolfgang;Franke, Andre;Bromberg, YanaFunctional sequencing read annotation for high precision microbiome analysisNucleic Acids Research2017464e23-e23
Zhu, Chengsheng;Mahlich, Yannick;Miller, Maximilian;Bromberg, YanafusionDB: assessing microbial diversity and environmental preferences via functional similarity networksNucleic Acids Research201746D1D535-D541
Mahlich, Yannick;Steinegger, Martin;Rost, Burkhard;Bromberg, YanaHFSP: high speed homology-driven function annotation of proteinsBioinformatics20183413i304-i312
Harel, Arye;Falkowski, Paul;Bromberg, YanaTrAnsFuSE refines the search for protein function: oxidoreductasesIntegr. Biol.201247765
Bromberg, Y.;Rost, B.SNAP: predict effect of non-synonymous polymorphisms on functionNucleic Acids Research200735113823-3835