A. Taudt, M. A. Nguyen, M. Heinig, F. Johannes, M. Colomé-Tatché
chromstaR: Tracking combinatorial chromatin state dynamics in space and time.
2016

L. Morgado, R. C. Jansen, F. Johannes
Learning sequence patterns of AGO-sRNA affinity from high-throughput sequencing libraries to improve in silico functional small RNA detection and classification in plants
2017

I. Kakoulidou, R. S. Piecyk, R. C. Meyer, M. Kuhlmann, C. Gutjahr, T. Altmann, F. Johannes
Parental pericentromeric methylation status drives methylome remodelling and heterosis in epigenetic hybrids
2022

T. Sellinger, F. Johannes, A. Tellier,
Improved inference of population histories by integrating genomic and epigenomic data
2023

Ricci, William A.;Lu, Zefu;Ji, Lexiang;Marand, Alexandre P.;Ethridge, Christina L.;Murphy, Nathalie G.;Noshay, Jaclyn M.;Galli, Mary;Mejía-Guerra, María Katherine;Colomé-Tatché, Maria;Johannes, Frank;Rowley, M. Jordan;Corces, Victor G.;Zhai, Jixian;Scanlon, Michael J.;Buckler, Edward S.;Gallavotti, Andrea;Springer, Nathan M.;Schmitz, Robert J.;Zhang, Xiaoyu
Widespread long-range cis-regulatory elements in the maize genome
Nature Plants
2019
5
12
1237-1249

Colomé-Tatché, Maria;Johannes, Frank
Signatures of Dobzhansky–Muller Incompatibilities in the Genomes of Recombinant Inbred Lines
Genetics
2015
202
2
825-841

Taudt, Aaron;Roquis, David;Vidalis, Amaryllis;Wardenaar, René;Johannes, Frank;Colomé-Tatché, Maria
METHimpute: imputation-guided construction of complete methylomes from WGBS data
BMC Genomics
2018
19
1

Kooke, Rik;Morgado, Lionel;Becker, Frank;van Eekelen, Henriëtte;Hazarika, Rashmi;Zheng, Qunfeng;de Vos, Ric C.H.;Johannes, Frank;Keurentjes, Joost J.B.
Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map
Genome Research
2018
29
1
96-106

Furci, Leonardo;Jain, Ritushree;Stassen, Joost;Berkowitz, Oliver;Whelan, James;Roquis, David;Baillet, Victoire;Colot, Vincent;Johannes, Frank;Ton, Jurriaan
Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis
eLife
2019
8

Johannes, Frank
DNA methylation makes mutational history
Nature Plants
2019
5
8
772-773