Probul, Niklas;Huang, Zihua;Saak, Christina Caroline;Baumbach, Jan;List, Markus
AI in microbiome‐related healthcare
Microbial Biotechnology
2024
17
11

Häcker, Deborah;Siebert, Kolja;Smith, Byron J.;Köhler, Nikolai;Riva, Alessandra;Mahapatra, Aritra;Heimes, Helena;Nie, Jiatong;Metwaly, Amira;Hölz, Hannes;Manz, Quirin;De Zen, Federica;Heetmeyer, Jeannine;Socas, Katharina;Le Thi, Giang;Meng, Chen;Kleigrewe, Karin;Pauling, Josch K.;Neuhaus, Klaus;List, Markus;Pollard, Katherine S.;Schwerd, Tobias;Haller, Dirk
Exclusive enteral nutrition initiates individual protective microbiome changes to induce remission in pediatric Crohn’s disease
Cell Host & Microbe
2024

Hoelz, Hannes;Faro, Tim;Frank, Marie-Luise;Forné, Ignasi;Kugelmann, Daniela;Jurk, Anja;Buehler, Simon;Siebert, Kolja;Matchado, Monica;Straub, Tobias;Hering, Annett;Piontek, Guido;Mueller, Susanna;Koletzko, Sibylle;List, Markus;Steiger, Katja;Rudelius, Martina;Waschke, Jens;Schwerd, Tobias
Persistent desmoglein-1 downregulation and periostin accumulation in histologic remission of eosinophilic esophagitis
Journal of Allergy and Clinical Immunology
2024

Hoffmann, Markus;Poschenrieder, Julian M;Incudini, Massimiliano;Baier, Sylvie;Fritz, Amelie;Maier, Andreas;Hartung, Michael;Hoffmann, Christian;Trummer, Nico;Adamowicz, Klaudia;Picciani, Mario;Scheibling, Evelyn;Harl, Maximilian V;Lesch, Ingmar;Frey, Hunor;Kayser, Simon;Wissenberg, Paul;Schwartz, Leon;Hafner, Leon;Acharya, Aakriti;Hackl, Lena;Grabert, Gordon;Lee, Sung-Gwon;Cho, Gyuhyeok;Cloward, Matthew E;Jankowski, Jakub;Lee, Hye Kyung;Tsoy, Olga;Wenke, Nina;Pedersen, Anders Gorm;Bønnelykke, Klaus;Mandarino, Antonio;Melograna, Federico;Schulz, Laura;Climente-González, Héctor;Wilhelm, Mathias;Iapichino, Luigi;Wienbrandt, Lars;Ellinghaus, David;Van Steen, Kristel;Grossi, Michele;Furth, Priscilla A;Hennighausen, Lothar;Di Pierro, Alessandra;Baumbach, Jan;Kacprowski, Tim;List, Markus;Blumenthal, David B
Network medicine-based epistasis detection in complex diseases: ready for quantum computing
Nucleic Acids Research
2024

Bernett, Judith;Blumenthal, David B.;Grimm, Dominik G.;Haselbeck, Florian;Joeres, Roman;Kalinina, Olga V.;List, Markus
Guiding questions to avoid data leakage in biological machine learning applications
Nature Methods
2024
21
8
1444-1453

Merotto, Lorenzo;Sturm, Gregor;Dietrich, Alexander;List, Markus;Finotello, Francesca
Making mouse transcriptomics deconvolution accessible with immunedeconv
Bioinformatics Advances
2024
4
1

Hysenaj, Franc;Lauber, Michael;Bast-Habersbrunner, Andrea;List, Markus;Klingenspor, Martin
Single-cell transcriptome analysis reveals secretin as a hallmark of human enteroendocrine cell maturation
Scientific Reports
2024
14
1

Dill, Veronika;Kirmes, Kilian;Han, Jiaying;Klug, Melissa;Rosenbaum, Marc;Viggiani, Giacomo;von Scheidt, Moritz;List, Markus;Herhaus, Peter;Ruland, Jürgen;Bassermann, Florian;Laugwitz, Karl-Ludwig;Götze, Katharina S.;Jost, Philipp J.;Jilg, Stefanie;Bloxham, Conor J.;Raake, Philip W.J.;Bernlochner, Isabell;Bongiovanni, Dario
Platelet mass cytometry reveals dysregulation of prothrombotic pathways in essential thrombocythemia
Platelets
2024
35
1

Anokian, Ezequiel;Bernett, Judith;Freeman, Adrian;List, Markus;Santamaría, Lucía Prieto;Tanoli, Ziaurrehman;Bonnin, Sarah
Machine Learning and Artificial Intelligence in Drug Repurposing—Challenges and Perspectives
Drug Repurposing
2024
1
1

Maier, Andreas;Hartung, Michael;Abovsky, Mark;Adamowicz, Klaudia;Bader, Gary D;Baier, Sylvie;Blumenthal, David B;Chen, Jing;Elkjaer, Maria L;Garcia-Hernandez, Carlos;Helmy, Mohamed;Hoffmann, Markus;Jurisica, Igor;Kotlyar, Max;Lazareva, Olga;Levi, Hagai;List, Markus;Lobentanzer, Sebastian;Loscalzo, Joseph;Malod-Dognin, Noel;Manz, Quirin;Matschinske, Julian;Mee, Miles;Oubounyt, Mhaned;Pastrello, Chiara;Pico, Alexander R;Pillich, Rudolf T;Poschenrieder, Julian M;Pratt, Dexter;Pržulj, Nataša;Sadegh, Sepideh;Saez-Rodriguez, Julio;Sarkar, Suryadipto;Shaked, Gideon;Shamir, Ron;Trummer, Nico;Turhan, Ugur;Wang, Rui-Sheng;Zolotareva, Olga;Baumbach, Jan
Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposing
Nucleic Acids Research
2024