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Matchado, Monica Steffi;Rühlemann, Malte;Reitmeier, Sandra;Kacprowski, Tim;Frost, Fabian;Haller, Dirk;Baumbach, Jan;List, Markus
On the limits of 16S rRNA gene-based metagenome prediction and functional profiling
Microbial Genomics
2024
10
2

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Hoffmann, Markus;Willruth, Lina-Liv;Dietrich, Alexander;Lee, Hye Kyung;Knabl, Ludwig;Trummer, Nico;Baumbach, Jan;Furth, Priscilla A.;Hennighausen, Lothar;List, Markus
Blood transcriptomics analysis offers insights into variant-specific immune response to SARS-CoV-2
Scientific Reports
2024
14
1

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Matschinske, Julian;Späth, Julian;Bakhtiari, Mohammad;Probul, Niklas;Kazemi Majdabadi, Mohammad Mahdi;Nasirigerdeh, Reza;Torkzadehmahani, Reihaneh;Hartebrodt, Anne;Orban, Balazs-Attila;Fejér, Sándor-József;Zolotareva, Olga;Das, Supratim;Baumbach, Linda;Pauling, Josch K;Tomašević, Olivera;Bihari, Béla;Bloice, Marcus;Donner, Nina C;Fdhila, Walid;Frisch, Tobias;Hauschild, Anne-Christin;Heider, Dominik;Holzinger, Andreas;Hötzendorfer, Walter;Hospes, Jan;Kacprowski, Tim;Kastelitz, Markus;List, Markus;Mayer, Rudolf;Moga, Mónika;Müller, Heimo;Pustozerova, Anastasia;Röttger, Richard;Saak, Christina C;Saranti, Anna;Schmidt, Harald H H W;Tschohl, Christof;Wenke, Nina K;Baumbach, Jan
The FeatureCloud Platform for Federated Learning in Biomedicine: Unified Approach
Journal of Medical Internet Research
2023
25
e42621

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Schmidt, Florian;List, Markus;Cukuroglu, Engin;Köhler, Sebastian;Göke, Jonathan;Schulz, Marcel H
An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets
Bioinformatics
2018
34
17
i908-i916

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Sonja M. Kessler, Kevan Hosseini, Usama Khamis Hussein, Kyoung Min Kim, Markus List, Christina S. Schultheiß, Marcel H. Schulz, Stephan Laggai, Kyu Yun Jang, Alexandra K. Kiemer
Hepatocellular Carcinoma and Nuclear Paraspeckles: Induction in Chemoresistance and Prediction for Poor Survival
Cellular Physiology and Biochemistry
2019
52
4
787-801

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Sturm, Gregor;Finotello, Francesca;Petitprez, Florent;Zhang, Jitao David;Baumbach, Jan;Fridman, Wolf H;List, Markus;Aneichyk, Tatsiana
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
Bioinformatics
2019
35
14
i436-i445

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List, Markus;Dehghani Amirabad, Azim;Kostka, Dennis;Schulz, Marcel H
Large-scale inference of competing endogenous RNA networks with sparse partial correlation
Bioinformatics
2019
35
14
i596-i604

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Mergner, Julia;Frejno, Martin;List, Markus;Papacek, Michael;Chen, Xia;Chaudhary, Ajeet;Samaras, Patroklos;Richter, Sandra;Shikata, Hiromasa;Messerer, Maxim;Lang, Daniel;Altmann, Stefan;Cyprys, Philipp;Zolg, Daniel P.;Mathieson, Toby;Bantscheff, Marcus;Hazarika, Rashmi R.;Schmidt, Tobias;Dawid, Corinna;Dunkel, Andreas;Hofmann, Thomas;Sprunck, Stefanie;Falter-Braun, Pascal;Johannes, Frank;Mayer, Klaus F. X.;Jürgens, Gerd;Wilhelm, Mathias;Baumbach, Jan;Grill, Erwin;Schneitz, Kay;Schwechheimer, Claus;Kuster, Bernhard
Mass-spectrometry-based draft of the Arabidopsis proteome
Nature
2020
579
7799
409-414

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Scherer, Michael;Nebel, Almut;Franke, Andre;Walter, Jörn;Lengauer, Thomas;Bock, Christoph;Müller, Fabian;List, Markus
Quantitative comparison of within-sample heterogeneity scores for DNA methylation data
Nucleic Acids Research
2020
48
8
e46-e46

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Blumenthal, David B;Viola, Lorenzo;List, Markus;Baumbach, Jan;Tieri, Paolo;Kacprowski, Tim
EpiGEN: an epistasis simulation pipeline
Bioinformatics
2020
36
19
4957-4959