Bernett, Judith;Krupke, Dominik;Sadegh, Sepideh;Baumbach, Jan;Fekete, Sándor P;Kacprowski, Tim;List, Markus;Blumenthal, David B
Robust disease module mining via enumeration of diverse prize-collecting Steiner trees
Bioinformatics
2022

Nasirigerdeh, Reza;Torkzadehmahani, Reihaneh;Matschinske, Julian;Frisch, Tobias;List, Markus;Späth, Julian;Weiss, Stefan;Völker, Uwe;Pitkänen, Esa;Heider, Dominik;Wenke, Nina Kerstin;Kaissis, Georgios;Rueckert, Daniel;Kacprowski, Tim;Baumbach, Jan
sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies
Genome Biology
2022
23
1

Bongiovanni, Dario;Klug, Melissa;Lazareva, Olga;Weidlich, Simon;Biasi, Marina;Ursu, Simona;Warth, Sarah;Buske, Christian;Lukas, Marina;Spinner, Christoph D.;Scheidt, Moritz von;Condorelli, Gianluigi;Baumbach, Jan;Laugwitz, Karl-Ludwig;List, Markus;Bernlochner, Isabell
SARS-CoV-2 infection is associated with a pro-thrombotic platelet phenotype
Cell Death & Disease
2021
12
1

Hoffmann, Markus;Pachl, Elisabeth;Hartung, Michael;Stiegler, Veronika;Baumbach, Jan;Schulz, Marcel H;List, Markus
SPONGEdb: a pan-cancer resource for competing endogenous RNA interactions
NAR Cancer
2021
3
1

Abellan-Schneyder, Isabel;Matchado, Monica S.;Reitmeier, Sandra;Sommer, Alina;Sewald, Zeno;Baumbach, Jan;List, Markus;Neuhaus, Klaus
Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing
mSphere
2021
6
1

Manz, Quirin;Tsoy, Olga;Fenn, Amit;Baumbach, Jan;Völker, Uwe;List, Markus;Kacprowski, Tim
ASimulatoR: splice-aware RNA-Seq data simulation
Bioinformatics
2021
37
18
3008-3010

Parise, Doglas;Parise, Mariana Teixeira Dornelles;Kataka, Evans;Kato, Rodrigo Bentes;List, Markus;Tauch, Andreas;Azevedo, Vasco Ariston de Carvalho;Baumbach, Jan
On the Consistency between Gene Expression and the Gene Regulatory Network of Corynebacterium glutamicum
Network and Systems Medicine
2021
4
1
51-59

Scherer, Michael;Schmidt, Florian;Lazareva, Olga;Walter, Jörn;Baumbach, Jan;Schulz, Marcel H.;List, Markus
Machine learning for deciphering cell heterogeneity and gene regulation
Nature Computational Science
2021
1
3
183-191

Lazareva, Olga;Baumbach, Jan;List, Markus;Blumenthal, David B
On the limits of active module identification
Briefings in Bioinformatics
2021
22
5

Sarno, Federica;;Benincasa, Giuditta;List, Markus;Barabasi, Albert-Lazlo;Baumbach, Jan;Ciardiello, Fortunato;Filetti, Sebastiano;Glass, Kimberly;Loscalzo, Joseph;Marchese, Cinzia;Maron, Bradley A.;Paci, Paola;Parini, Paolo;Petrillo, Enrico;Silverman, Edwin K.;Verrienti, Antonella;Altucci, Lucia;Napoli, Claudio
Clinical epigenetics settings for cancer and cardiovascular diseases: real-life applications of network medicine at the bedside
Clinical Epigenetics
2021
13
1