Coleman, Olivia I.;Sorbie, Adam;Riva, Alessandra;von Stern, Miriam;Kuhls, Stephanie;Selegato, Denise M.;Siegert, Luisa;Keidel, Isabel;Köhler, Nikolai;Wirbel, Jakob;Kacprowski, Tim;Dunkel, Andreas;Pauling, Josch K.;Plagge, Johannes;Mediel-Cuadra, Diego;Wagner, Sophia J.;Chadly, Ines;Bierwith, Sandra;Peng, Tingying;Metzler, Thomas;Li, Xin;Heikenwälder, Mathias;Schafmayer, Clemens;Hinz, Sebastian;Röder, Christian;Röcken, Christoph;Zimmermann, Michael;Rosenstiel, Philip;Steiger, Katja;Jesinghaus, Moritz;Liebisch, Gerhard;Ecker, Josef;Schmidt, Christina;Zeller, Georg;Janssen, Klaus-Peter;Haller, Dirk
ATF6 activation alters colonic lipid metabolism causing tumour-associated microbial adaptation
Nature Metabolism
2025

Tina, Krammel;Jiatong, Nie;Deborah, Häcker;Tobias, Schwerd;Doriane, Aguanno;Dirk, Haller
Therapeutic mechanisms of exclusive enteral nutrition in Crohn’s disease
Seminars in Immunopathology
2025
47
1

Yoon, Hongsup;Gerdes, Lisa Ann;Beigel, Florian;Sun, Yihui;Kövilein, Janine;Wang, Jiancheng;Kuhlmann, Tanja;Flierl-Hecht, Andrea;Haller, Dirk;Hohlfeld, Reinhard;Baranzini, Sergio E.;Wekerle, Hartmut;Peters, Anneli
Multiple sclerosis and gut microbiota: Lachnospiraceae from the ileum of MS twins trigger MS-like disease in germfree transgenic mice—An unbiased functional study
Proceedings of the National Academy of Sciences
2025
122
18

Kiessling, Silke;Liu, Shuaitong;Haller, Dirk;Thaiss, Christoph A.
Origins and functions of microbiome rhythms
Cell Host & Microbe
2025
33
6
808-819

Kövilein, Janine;Sorbie, Adam;Khaloian, Sevana;Küntzel, Vanessa;von Stern, Miriam;Ahmed, Mohamed;Jarosch, Sebastian;Remke, Marianne;Metwaly, Amira;Reuss, Elena M;Busch, Dirk H;Allez, Matthieu;Steiger, Katja;Schraml, Barbara;Coleman, Olivia I;Haller, Dirk
Susceptibility to inflammatory bowel diseases promotes invasive carcinomas in a murine model of ATF6-driven colon cancer
Journal of Crohn's and Colitis
2025
19
7

Siebert, Kolja;Faro, Tim;Köhler, Nikolai;Hölz, Hannes;Jarosch, Sebastian;Matchado, Monica;Häcker, Deborah;De Zen, Federica;Hajji, Mohammad Samer;Lurz, Eberhard;Koletzko, Sibylle;Pauling, Josch K.;Steiger, Katja;Neuhaus, Klaus;Ohnmacht, Caspar;List, Markus;Busch, Dirk H.;Haller, Dirk;Schwerd, Tobias
Endoscopic healing in pediatric IBD perpetuates a persistent signature defined by Th17 cells with molecular and microbial drivers of disease
Cell Reports Medicine
2025
6
7
102236

Xian, Feng;Brenek, Malena;Krisp, Christoph;Urbauer, Elisabeth;Ravi Kumar, Ranjith Kumar;Aguanno, Doriane;Srikumar, Tharan;Liu, Qixin;Barry, Allison M.;Ma, Bin;Krieger, Jonathan;Haller, Dirk;Schmidt, Manuela;Gómez-Varela, David
Ultra-sensitive metaproteomics redefines the dark metaproteome, uncovering host-microbiome interactions and drug targets in intestinal diseases
Nature Communications
2025
16
1

Misselwitz, Benjamin;Haller, Dirk
Die intestinale Mikrobiota bei chronisch-entzündlichen Darmerkrankungen
Die Innere Medizin
2025
66
2
146-155

Metwaly, Amira;Kriaa, Aicha;Hassani, Zahra;Carraturo, Federica;Druart, Celine;;Trebicka, Jonel;Godoy, Yolanda;Schierwagen, Robert;Bork, Peer;Iyappan, Anandhi;Typas, Nassos;Hazenbrink, Diënty Hendrina Maria Johanna;Zwart, Hub;Zitvogel, Laurence;Derosa, Lisa;Silva, Carolina Alves Costa;Rhimi, Moez;Veiga, Patrick;Pons, Nicolas;Prost, Pierre-Louis;Betsou, Fay;Cordaillat-Simmons, Magali;Rodriguez, Julie;Jarde, Alexander;Boutron, Isabelle;Ravaud, Philippe;Krag, Aleksander;Israelsen, Mads;Villesen, Ida Falk;Ross, Paul;O’Toole, Paul;Lavelle, Aonghus;Claesson, Marcus;Joos, Raphaela;Hill, Colin;Shkoporov, Andrey;Loftus, Saba;Boucher, Katy;Arumugam, Manimozhayan;Sarathi, Arjun;Morozova, Vitalina;Segata, Nicola;Asnicar, Francesco;Pinto, Federica;Arnauts, Kaline;Wilmes, Paul;Walter, Jens;Rosshart, Stephan;Desai, Mahesh S.;Dore, Joel;Fasano, Alessio;Blottiere, Hervé M.;Maguin, Emmanuelle;Haller, Dirk
A Consensus Statement on establishing causality, therapeutic applications and the use of preclinical models in microbiome research
Nature Reviews Gastroenterology & Hepatology
2025
22
5
343-356

Baumeister, Theresa;Proaño-Vasco, Andrea;Metwaly, Amira;Kleigrewe, Karin;Kuznetsov, Alexander;Schömig, Linus R.;Borgmann, Martin;Khiat, Mohammed;Anand, Akanksha;Strangmann, Julia;Böttcher, Katrin;Haller, Dirk;Dunkel, Andreas;Somoza, Veronika;Reiter, Sinah;Meng, Chen;Thimme, Robert;Schmid, Roland M.;Patil, Deepa T.;Burgermeister, Elke;Huang, Yiming;Sun, Yiwei;Wang, Harris H.;Wang, Timothy C.;Abrams, Julian A.;Quante, Michael
Loss of FXR or Bile Acid-dependent Inhibition Accelerate Carcinogenesis of Gastroesophageal Adenocarcinoma
Cellular and Molecular Gastroenterology and Hepatology
2025
19
8
101505