Merotto, Lorenzo;Sturm, Gregor;Dietrich, Alexander;List, Markus;Finotello, Francesca
Making mouse transcriptomics deconvolution accessible with immunedeconv
Bioinformatics Advances
2024
4
1

Hysenaj, Franc;Lauber, Michael;Bast-Habersbrunner, Andrea;List, Markus;Klingenspor, Martin
Single-cell transcriptome analysis reveals secretin as a hallmark of human enteroendocrine cell maturation
Scientific Reports
2024
14
1

Dill, Veronika;Kirmes, Kilian;Han, Jiaying;Klug, Melissa;Rosenbaum, Marc;Viggiani, Giacomo;von Scheidt, Moritz;List, Markus;Herhaus, Peter;Ruland, Jürgen;Bassermann, Florian;Laugwitz, Karl-Ludwig;Götze, Katharina S.;Jost, Philipp J.;Jilg, Stefanie;Bloxham, Conor J.;Raake, Philip W.J.;Bernlochner, Isabell;Bongiovanni, Dario
Platelet mass cytometry reveals dysregulation of prothrombotic pathways in essential thrombocythemia
Platelets
2024
35
1

Anokian, Ezequiel;Bernett, Judith;Freeman, Adrian;List, Markus;Santamaría, Lucía Prieto;Tanoli, Ziaurrehman;Bonnin, Sarah
Machine Learning and Artificial Intelligence in Drug Repurposing—Challenges and Perspectives
Drug Repurposing
2024
1
1

Maier, Andreas;Hartung, Michael;Abovsky, Mark;Adamowicz, Klaudia;Bader, Gary D;Baier, Sylvie;Blumenthal, David B;Chen, Jing;Elkjaer, Maria L;Garcia-Hernandez, Carlos;Helmy, Mohamed;Hoffmann, Markus;Jurisica, Igor;Kotlyar, Max;Lazareva, Olga;Levi, Hagai;List, Markus;Lobentanzer, Sebastian;Loscalzo, Joseph;Malod-Dognin, Noel;Manz, Quirin;Matschinske, Julian;Mee, Miles;Oubounyt, Mhaned;Pastrello, Chiara;Pico, Alexander R;Pillich, Rudolf T;Poschenrieder, Julian M;Pratt, Dexter;Pržulj, Nataša;Sadegh, Sepideh;Saez-Rodriguez, Julio;Sarkar, Suryadipto;Shaked, Gideon;Shamir, Ron;Trummer, Nico;Turhan, Ugur;Wang, Rui-Sheng;Zolotareva, Olga;Baumbach, Jan
Drugst.One — a plug-and-play solution for online systems medicine and network-based drug repurposing
Nucleic Acids Research
2024

Heppner, Nina;Reitmeier, Sandra;Heddes, Marjolein;Merino, Michael Vig;Schwartz, Leon;Dietrich, Alexander;List, Markus;Gigl, Michael;Meng, Chen;van der Veen, Daan R.;Schirmer, Melanie;Kleigrewe, Karin;Omer, Hélène;Kiessling, Silke;Haller, Dirk
Diurnal rhythmicity of infant fecal microbiota and metabolites: A randomized controlled interventional trial with infant formula
Cell Host & Microbe
2024
32
4
573-587.e5

Galindez, Gihanna;List, Markus;Baumbach, Jan;Völker, Uwe;Mäder, Ulrike;Blumenthal, David B;Kacprowski, Tim
Inference of differential gene regulatory networks using boosted differential trees
Bioinformatics Advances
2024

Bernett, Judith;Blumenthal, David B;List, Markus
Cracking the black box of deep sequence-based protein–protein interaction prediction
Briefings in Bioinformatics
2024
25
2

Matchado, Monica Steffi;Rühlemann, Malte;Reitmeier, Sandra;Kacprowski, Tim;Frost, Fabian;Haller, Dirk;Baumbach, Jan;List, Markus
On the limits of 16S rRNA gene-based metagenome prediction and functional profiling
Microbial Genomics
2024
10
2

Hoffmann, Markus;Willruth, Lina-Liv;Dietrich, Alexander;Lee, Hye Kyung;Knabl, Ludwig;Trummer, Nico;Baumbach, Jan;Furth, Priscilla A.;Hennighausen, Lothar;List, Markus
Blood transcriptomics analysis offers insights into variant-specific immune response to SARS-CoV-2
Scientific Reports
2024
14
1