Gabriel, Wassim;Picciani, Mario;The, Matthew;Wilhelm, Mathias
Deep Learning-Assisted Analysis of Immunopeptidomics Data
Methods in Molecular Biology
Springer US
2024

Kalhor, Mostafa;Lapin, Joel;Picciani, Mario;Wilhelm, Mathias
Rescoring Peptide Spectrum Matches: Boosting Proteomics Performance by Integrating Peptide Property Predictors into Peptide Identification
Molecular & Cellular Proteomics
2024
100798

Adams, Charlotte;Gabriel, Wassim;Laukens, Kris;Picciani, Mario;Wilhelm, Mathias;Bittremieux, Wout;Boonen, Kurt
Fragment ion intensity prediction improves the identification rate of non-tryptic peptides in timsTOF
Nature Communications
2024
15
1

Klaproth-Andrade, Daniela;Hingerl, Johannes;Bruns, Yanik;Smith, Nicholas H.;Träuble, Jakob;Wilhelm, Mathias;Gagneur, Julien
Deep learning-driven fragment ion series classification enables highly precise and sensitive de novo peptide sequencing
Nature Communications
2024
15
1