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Proteogenomic analysis reveals RNA as a source for tumor-agnostic neoantigen identification
Nature Communications
2023
14
1

Neely, Benjamin A.;Dorfer, Viktoria;Martens, Lennart;Bludau, Isabell;Bouwmeester, Robbin;Degroeve, Sven;Deutsch, Eric W.;Gessulat, Siegfried;Käll, Lukas;Palczynski, Pawel;Payne, Samuel H.;Rehfeldt, Tobias Greisager;Schmidt, Tobias;Schwämmle, Veit;Uszkoreit, Julian;Vizcaíno, Juan Antonio;Wilhelm, Mathias;Palmblad, Magnus
Toward an Integrated Machine Learning Model of a Proteomics Experiment
Journal of Proteome Research
2023
22
3
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Zecha, Jana;Bayer, Florian P.;Wiechmann, Svenja;Woortman, Julia;Berner, Nicola;Müller, Julian;Schneider, Annika;Kramer, Karl;Abril-Gil, Mar;Hopf, Thomas;Reichart, Leonie;Chen, Lin;Hansen, Fynn M.;Lechner, Severin;Samaras, Patroklos;Eckert, Stephan;Lautenbacher, Ludwig;Reinecke, Maria;Hamood, Firas;Prokofeva, Polina;Vornholz, Larsen;Falcomatà, Chiara;Dorsch, Madeleine;Schröder, Ayla;Venhuizen, Anton;Wilhelm, Stephanie;Médard, Guillaume;Stoehr, Gabriele;Ruland, Jürgen;Grüner, Barbara M.;Saur, Dieter;Buchner, Maike;Ruprecht, Benjamin;Hahne, Hannes;The, Matthew;Wilhelm, Mathias;Kuster, Bernhard
Decrypting drug actions and protein modifications by dose- and time-resolved proteomics
Science
2023
380
6640
93-101