Häcker, Deborah;Siebert, Kolja;Smith, Byron J.;Köhler, Nikolai;Riva, Alessandra;Mahapatra, Aritra;Heimes, Helena;Nie, Jiatong;Metwaly, Amira;Hölz, Hannes;Manz, Quirin;De Zen, Federica;Heetmeyer, Jeannine;Socas, Katharina;Le Thi, Giang;Meng, Chen;Kleigrewe, Karin;Pauling, Josch K.;Neuhaus, Klaus;List, Markus;Pollard, Katherine S.;Schwerd, Tobias;Haller, Dirk
Exclusive enteral nutrition initiates individual protective microbiome changes to induce remission in pediatric Crohn’s disease
Cell Host & Microbe
2024

Heimes, Helena;Häcker, Deborah;Omer, Hélène;van der Veen, Daan R.;Kiessling, Silke;Haller, Dirk
Protocol to study human gut bacterial communities and rhythmicity ex vivo using a chemostat system
STAR Protocols
2024
5
4
103419

Rodriguez, Julie;Hassani, Zahra;Alves Costa Silva, Carolina;Betsou, Fay;Carraturo, Federica;Fasano, Alessio;Israelsen, Mads;Iyappan, Anandhi;Krag, Aleksander;Metwaly, Amira;Schierwagen, Robert;Trebicka, Jonel;Zwart, Hub;Doré, Joel;Cordaillat-Simmons, Magali;Druart, Celine;Fasano, Alessio;Carraturo, Federica;Trebicka, Jonel;Godoy, Yolanda;Schierwagen, Robert;Bork, Peer;Iyappan, Anandhi;Typas, Nassos;Hazenbrink, Dienty Hendrina Maria Johanna;Zwart, Hub;Zitvogel, Laurence;Derosa, Lisa;Alves Costa Silva, Carolina;Doré, Joel;Blottière, Hervé;Kriaa, Aicha;Maguin, Emmanuelle;Rhimi, Moez;Veiga, Patrick;Pons, Nicolas;Hassani, Zahra;Prost, Pierre-Louis;Betsou, Fay;Druart, Celine;Cordaillat-Simmons, Magali;Rodriguez, Julie;Jarde, Alexander;Boutron, Isabelle;Ravaud, Philippe;Krag, Aleksander;Israelsen, Mads;Falk Villesen, Ida;Haller, Dirk;Metwaly, Amira;Ross, Paul;O'Toole, Paul;Lavelle, Aonghus;Claesson, Marcus;Joos, Raphaela;Hill, Colin;Shkoporov, Andrey;Loftus, Saba;Boucher, Katy;Arumugam, Manimozhayan;Sarathi, Arjun;Morozova, Vitalina;Segata, Nicola;Asnicar, Francesco;Pinto, Federica
State of the art and the future of microbiome-based biomarkers: a multidisciplinary Delphi consensus
The Lancet Microbe
2024
100948

Hemmati, Maryam;Wudy, Susanne I.;Hackbarth, Franziska;Mittermeier-Kleßinger, Verena K.;Coleman, Olivia I.;Haller, Dirk;Ludwig, Christina;Dawid, Corinna;Kleigrewe, Karin
Development of a Global Metabo-Lipid-Prote-omics Workflow to Compare Healthy Proximal and Distal Colonic Epithelium in Mice
Journal of Proteome Research
2024
23
8
3124-3140

Hemmati, Maryam;Wudy, Susanne I.;Hackbarth, Franziska;Mittermeier-Kleßinger, Verena K.;Coleman, Olivia I.;Haller, Dirk;Ludwig, Christina;Dawid, Corinna;Kleigrewe, Karin
Development of a Global Metabo-Lipid-Prote-omics Workflow to Compare Healthy Proximal and Distal Colonic Epithelium in Mice
Journal of Proteome Research
2024
23
8
3124-3140

Niu, Yunhui;Heddes, Marjolein;Altaha, Baraa;Birkner, Michael;Kleigrewe, Karin;Meng, Chen;Haller, Dirk;Kiessling, Silke
Targeting the intestinal circadian clock by meal timing ameliorates gastrointestinal inflammation
Cellular & Molecular Immunology
2024
21
8
842-855

Schult, David;Maurer, H. Carlo;Frolova, Marina;Ringelhan, Marc;Mayr, Ulrich;Ulrich, Jörg;Heilmaier, Markus;Rasch, Sebastian;Lahmer, Tobias;Reitmeier, Sandra;Hennig, Chiara;Gassner, Christina;Thur, Niklas;Will, Theresa;Janssen, Klaus-Peter;Steiger, Katja;Jesinghaus, Moritz;Neuhaus, Klaus;Quante, Michael;Haller, Dirk;Abdelhafez, Mohamed;Schmid, Roland M.;Middelhoff, Moritz
Systematic Evaluation of Clinical, Nutritional, and Fecal Microbial Factors for Their Association With Colorectal Polyps
Clinical and Translational Gastroenterology
2023
15
2
e00660

Metwaly, Amira;Haller, Dirk
The TNF∆ARE Model of Crohn’s Disease-like Ileitis
Inflammatory Bowel Diseases
2024
30
1
132-145

Ramaboli, M. C.;Ocvirk, S.;Khan Mirzaei, M.;Eberhart, B. L.;Valdivia-Garcia, M.;Metwaly, A.;Neuhaus, K.;Barker, G.;Ru, J.;Nesengani, L. T.;Mahdi-Joest, D.;Wilson, A. S.;Joni, S. K.;Layman, D. C.;Zheng, J.;Mandal, R.;Chen, Q.;Perez, M. R.;Fortuin, S.;Gaunt, B.;Wishart, D.;Methé, B.;Haller, D.;Li, J. V.;Deng, L.;Swart, R.;O’Keefe, S. J. D.
Diet changes due to urbanization in South Africa are linked to microbiome and metabolome signatures of Westernization and colorectal cancer
Nature Communications
2024
15
1

Fasano, Alessio;Chassaing, Benoit;Haller, Dirk;Flores Ventura, Eduard;Carmen-Collado, Maria;Pastor, Nitida;Koren, Omry;Berni Canani, Roberto
Microbiota during pregnancy and early life: role in maternal−neonatal outcomes based on human evidence
Gut Microbes
2024
16
1