Woller, Fabian;Arend, Lis;Fuchsberger, Christian;List, Markus;Blumenthal, David B
NApy: efficient statistics in Python for large-scale heterogeneous data with enhanced support for missing data
GigaScience
2025
14

Grätz, Christian;Changoer, Prashant;Chiang, Dapi Menglin;Kersting, Johannes;Jaeger, Martin;Netea-Maier, Romana;Wudy, Susanne I.;Ludwig, Christina;List, Markus;Kirchner, Benedikt;Reithmair, Marlene;Pfaffl, Michael W.
Extracellular vesicle-associated transcriptomic and proteomic biomarkers show in vitro potential for vandetanib treatment monitoring in anaplastic thyroid cancer
Scientific Reports
2025
15
1

Siebert, Kolja;Faro, Tim;Köhler, Nikolai;Hölz, Hannes;Jarosch, Sebastian;Matchado, Monica;Häcker, Deborah;De Zen, Federica;Hajji, Mohammad Samer;Lurz, Eberhard;Koletzko, Sibylle;Pauling, Josch K.;Steiger, Katja;Neuhaus, Klaus;Ohnmacht, Caspar;List, Markus;Busch, Dirk H.;Haller, Dirk;Schwerd, Tobias
Endoscopic healing in pediatric IBD perpetuates a persistent signature defined by Th17 cells with molecular and microbial drivers of disease
Cell Reports Medicine
2025
6
7
102236

Schult-Hannemann, David;Gassner, Christina;Thur, Niklas;Hennig, Chiara;Fricke, Lisa;Liotta, Lucia;Weidlich, Simon;Matchado, Monica Steffi;Stecher, Bärbel;Arps, Leona;Steiger, Katja;Shakhtour, Julius;Jesinghaus, Moritz;List, Markus;Janssen, Klaus-Peter;Pourjam, Mohsen;Neuhaus, Klaus;Haller, Dirk;Schmid, Roland M;Quante, Michael;Middelhoff, Moritz;Maurer, H Carlo;;Abdelhafez, Mohamed;Mayr, Ulrich;Ulrich, Jörg;Heilmeier, Markus;Elnegouly, Mayada;Wiessner, Johannes;Bauer, Ulrike;Lahmer, Tobias;Ringelhan, Marc;Rasch, Sebastian;Ehmer, Ursula;Phillip, Veit;Einwächter, Henrik;Geisler, Fabian;Treiber, Matthias
Comparison of Different Sites of Microbiota Shows Increased Pseudomonas Species in the Gut Mucosa in Inflammatory Bowel Disease
Inflammatory Bowel Diseases
2025
32
2
339-349

Lio, Chit Tong;Düz, Tolga;Hoffmann, Markus;Willruth, Lina-Liv;Baumbach, Jan;List, Markus;Tsoy, Olga
Comprehensive benchmark of differential transcript usage analysis for bulk and single-cell RNA sequencing
NAR Genomics and Bioinformatics
2025
7
3

Picciani, Mario;Soleymaniniya, Armin;Müller, Julian;Sakhteman, Amirhossein;Tzanakis, Konstantinos;Bernett, Judith;Kahl, Elias;Hamood, Firas;Kersting, Johannes;Pourjam, Mohsen;Nagai, Luis Augusto Eijy;List, Markus;Kuster, Bernhard;The, Matthew;Wilhelm, Mathias
Mapping drug mechanisms with ProteomicsDB: unified omics and cell sensitivity data at scale
Nucleic Acids Research
2025

Rehawi, Ghalia;Hagenberg, Jonas;Sämann, Philipp G.;Moyon, Lambert;Binder, Elisabeth;List, Markus;Marsico, Annalisa;Knauer-Arloth, Janine
Integrative gene and isoform co-expression networks reveal regulatory rewiring in stress-related psychiatric disorders
iScience
2025
28
9
113342

Stahl, Merle;Straßer, Lena J;Lio, Chit Tong;Bernett, Judith;Röttger, Richard;List, Markus
Refinement strategies for Tangram for reliable single-cell to spatial mapping
Bioinformatics
2025
41
Supplement_1
i552-i560

Reim, Timo;Hartebrodt, Anne;Blumenthal, David B;Bernett, Judith;List, Markus
Deep learning models for unbiased sequence-based PPI prediction plateau at an accuracy of 0.65
Bioinformatics
2025
41
Supplement_1
i590-i598

Henao, Juan;Kindt, Alida;Seegmüller, Tanja;Foerster, Kai;Flemmer, Andreas W.;Behr, Juergen;Kneidinger, Nikolaus;Frankenberger, Marion;Theis, Fabian;Schubert, Benjamin;List, Markus;Hilgendorff, Anne
Multi-omic Signatures Relate to the Severity of Pulmonary Outcome in Neonates Traced into Adult Disease
Network and Systems Medicine
2025
1
1