Sturm, Gregor;List, Markus;Zhang, Jitao David
Tissue heterogeneity is prevalent in gene expression studies
NAR Genomics and Bioinformatics
2021
3
3

Arend, Lis;Bernett, Judith;Manz, Quirin;Klug, Melissa;Lazareva, Olga;Baumbach, Jan;Bongiovanni, Dario;List, Markus
A systematic comparison of novel and existing differential analysis methods for CyTOF data
Briefings in Bioinformatics
2021
23
1

Louadi, Zakaria;Elkjaer, Maria L.;Klug, Melissa;Lio, Chit Tong;Fenn, Amit;Illes, Zsolt;Bongiovanni, Dario;Baumbach, Jan;Kacprowski, Tim;List, Markus;Tsoy, Olga
Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases
Genome Biology
2021
22
1

Zolotareva, Olga;Nasirigerdeh, Reza;Matschinske, Julian;Torkzadehmahani, Reihaneh;Bakhtiari, Mohammad;Frisch, Tobias;Späth, Julian;Blumenthal, David B.;Abbasinejad, Amir;Tieri, Paolo;Kaissis, Georgios;Rückert, Daniel;Wenke, Nina K.;List, Markus;Baumbach, Jan
Flimma: a federated and privacy-aware tool for differential gene expression analysis
Genome Biology
2021
22
1

Klug, Melissa;Kirmes, Kilian;Han, Jiaying;Lazareva, Olga;Rosenbaum, Marc;Viggiani, Giacomo;von Scheidt, Moritz;Ruland, Jürgen;Baumbach, Jan;Condorelli, Gianluigi;Laugwitz, Karl-Ludwig;List, Markus;Bernlochner, Isabell;Bongiovanni, Dario
Mass cytometry of platelet-rich plasma: a new approach to analyze platelet surface expression and reactivity
Platelets
2021
1-8

Bongiovanni, Dario;Klug, Melissa;Lazareva, Olga;Weidlich, Simon;Biasi, Marina;Ursu, Simona;Warth, Sarah;Buske, Christian;Lukas, Marina;Spinner, Christoph D.;Scheidt, Moritz von;Condorelli, Gianluigi;Baumbach, Jan;Laugwitz, Karl-Ludwig;List, Markus;Bernlochner, Isabell
SARS-CoV-2 infection is associated with a pro-thrombotic platelet phenotype
Cell Death & Disease
2021
12
1

Hoffmann, Markus;Pachl, Elisabeth;Hartung, Michael;Stiegler, Veronika;Baumbach, Jan;Schulz, Marcel H;List, Markus
SPONGEdb: a pan-cancer resource for competing endogenous RNA interactions
NAR Cancer
2021
3
1

Abellan-Schneyder, Isabel;Matchado, Monica S.;Reitmeier, Sandra;Sommer, Alina;Sewald, Zeno;Baumbach, Jan;List, Markus;Neuhaus, Klaus
Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing
mSphere
2021
6
1

Manz, Quirin;Tsoy, Olga;Fenn, Amit;Baumbach, Jan;Völker, Uwe;List, Markus;Kacprowski, Tim
ASimulatoR: splice-aware RNA-Seq data simulation
Bioinformatics
2021
37
18
3008-3010

Parise, Doglas;Parise, Mariana Teixeira Dornelles;Kataka, Evans;Kato, Rodrigo Bentes;List, Markus;Tauch, Andreas;Azevedo, Vasco Ariston de Carvalho;Baumbach, Jan
On the Consistency between Gene Expression and the Gene Regulatory Network of Corynebacterium glutamicum
Network and Systems Medicine
2021
4
1
51-59