Hecker, Dennis;Lauber, Michael;Behjati Ardakani, Fatemeh;Ashrafiyan, Shamim;Manz, Quirin;Kersting, Johannes;Hoffmann, Markus;Schulz, Marcel H.;List, Markus
Computational tools for inferring transcription factor activity
PROTEOMICS
2023
23
23-24

Boniolo, Fabio;Hoffmann, Markus;Roggendorf, Norman;Tercan, Bahar;Baumbach, Jan;Castro, Mauro A A;Robertson, A Gordon;Saur, Dieter;List, Markus
spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape
Bioinformatics
2023
39
5

Hoffmann, Markus;Willruth, Lina-Liv;Dietrich, Alexander;Lee, Hye Kyung;Knabl, Ludwig;Trummer, Nico;Jankowski, Jakub;Baumbach, Jan;Furth, Priscilla;Hennighausen, Lothar;List, Markus
Insights into SARS-CoV-2 Immune Responses, Disease Severity, and Optimal Sequencing Depth
Insights into SARS-CoV-2 Immune Responses, Disease Severity, and Optimal Sequencing Depth
ScienceOpen
2023

Hoffmann, Markus;Schwartz, Leon;Ciora, Octavia-Andreea;Trummer, Nico;Willruth, Lina-Liv;Jankowski, Jakub;Lee, Hye Kyung;Baumbach, Jan;Furth, Priscilla A;Hennighausen, Lothar;List, Markus
circRNA-sponging: a pipeline for extensive analysis of circRNA expression and their role in miRNA sponging
Bioinformatics Advances
2023
3
1

Hoffmann, Markus;Trummer, Nico;Jankowski, Jakub;Lee, Hye Kyung;Willruth, Lina-Liv;Lazareva, Olga;Yuan, Kevin;Baumgarten, Nina;Schmidt, Florian;Baumbach, Jan;Schulz, Marcel H.;Blumenthal, David B.;Hennighausen, Lothar;List, Markus
TF-Prioritizer: a java pipeline to prioritize condition-specific transcription factors
bioRxiv
2022

Hernández-Lorenzo, Laura;Hoffmann, Markus;Scheibling, Evelyn;List, Markus;Matías-Guiu, Jordi A.;Ayala, Jose L.
On the limits of graph neural networks for the early diagnosis of Alzheimer’s disease
Scientific Reports
2022
12
1