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Zavadlav, Julija;Melo, Manuel Nuno;Marrink, Siewert J.;Praprotnik, Matej
Adaptive resolution simulation of an atomistic protein in MARTINI water
The Journal of Chemical Physics
2014
140
5
054114
Zavadlav, Julija;Melo, Manuel N.;Cunha, Ana V.;de Vries, Alex H.;Marrink, Siewert J.;Praprotnik, Matej
Adaptive Resolution Simulation of MARTINI Solvents
Journal of Chemical Theory and Computation
2014
10
6
2591-2598
Zavadlav, Julija;Melo, Manuel N.;Marrink, Siewert J.;Praprotnik, Matej
Adaptive resolution simulation of polarizable supramolecular coarse-grained water models
The Journal of Chemical Physics
2015
142
24
244118
Zavadlav, Julija;Podgornik, Rudolf;Praprotnik, Matej
Adaptive Resolution Simulation of a DNA Molecule in Salt Solution
Journal of Chemical Theory and Computation
2015
11
10
5035-5044
Zavadlav, J.;Podgornik, R.;Melo, M.N.;Marrink, S.J.;Praprotnik, M.
Adaptive resolution simulation of an atomistic DNA molecule in MARTINI salt solution
The European Physical Journal Special Topics
2016
225
8-9
1595-1607
Zavadlav, Julija;Marrink, Siewert J.;Praprotnik, Matej
Adaptive Resolution Simulation of Supramolecular Water: The Concurrent Making, Breaking, and Remaking of Water Bundles
Journal of Chemical Theory and Computation
2016
12
8
4138-4145
Zavadlav, Julija;Podgornik, Rudolf;Praprotnik, Matej
Order and interactions in DNA arrays: Multiscale molecular dynamics simulation
Scientific Reports
2017
7
1
Zavadlav, Julija;Bevc, Staš;Praprotnik, Matej
Adaptive resolution simulations of biomolecular systems
European Biophysics Journal
2017
46
8
821-835
Zavadlav, Julija;Praprotnik, Matej
Adaptive resolution simulations coupling atomistic water to dissipative particle dynamics
The Journal of Chemical Physics
2017
147
11
114110
Podgornik, Rudolf;Zavadlav, Julija;Praprotnik, Matej
Molecular Dynamics Simulation of High Density DNA Arrays
Computation
2018
6
1
3
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