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Coste, Amaury;Slejko, Ema;Zavadlav, Julija;Praprotnik, Matej
Developing an Implicit Solvation Machine Learning Model for Molecular Simulations of Ionic Media
Journal of Chemical Theory and Computation
2023

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Thaler, Stephan;Doehner, Gregor;Zavadlav, Julija
Scalable Bayesian Uncertainty Quantification for Neural Network Potentials: Promise and Pitfalls
Journal of Chemical Theory and Computation
2023
19
14
4520–4532

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Thaler, Stephan;Zavadlav, Julija
Uncertainty Quantification for Molecular Models via Stochastic Gradient MCMC
MATHMOD 2022 Discussion Contribution Volume
ARGESIM Publisher Vienna
2022

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Thaler, Stephan;Stupp, Maximilian;Zavadlav, Julija
Deep Coarse-grained Potentials via Relative Entropy Minimization
The Journal of Chemical Physics
2022
157
244103

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Zavadlav, Julija;Melo, Manuel Nuno;Marrink, Siewert J.;Praprotnik, Matej
Adaptive resolution simulation of an atomistic protein in MARTINI water
The Journal of Chemical Physics
2014
140
5
054114

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Zavadlav, Julija;Melo, Manuel N.;Cunha, Ana V.;de Vries, Alex H.;Marrink, Siewert J.;Praprotnik, Matej
Adaptive Resolution Simulation of MARTINI Solvents
Journal of Chemical Theory and Computation
2014
10
6
2591-2598

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Zavadlav, Julija;Melo, Manuel N.;Marrink, Siewert J.;Praprotnik, Matej
Adaptive resolution simulation of polarizable supramolecular coarse-grained water models
The Journal of Chemical Physics
2015
142
24
244118

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Zavadlav, Julija;Podgornik, Rudolf;Praprotnik, Matej
Adaptive Resolution Simulation of a DNA Molecule in Salt Solution
Journal of Chemical Theory and Computation
2015
11
10
5035-5044

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Zavadlav, J.;Podgornik, R.;Melo, M.N.;Marrink, S.J.;Praprotnik, M.
Adaptive resolution simulation of an atomistic DNA molecule in MARTINI salt solution
The European Physical Journal Special Topics
2016
225
8-9
1595-1607

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Zavadlav, Julija;Marrink, Siewert J.;Praprotnik, Matej
Adaptive Resolution Simulation of Supramolecular Water: The Concurrent Making, Breaking, and Remaking of Water Bundles
Journal of Chemical Theory and Computation
2016
12
8
4138-4145