Login
- Title:
Experimental data and software for simulation in publication: Mechanical forces instruct division plane orientation of cambium stem cells during radial growth in Arabidopsis thaliana
- Document type:
- Forschungsdaten
- Publication date:
- 11.10.2024
- Responsible:
- Karen, Alim
- Authors:
- Höfler, Mathias; Liu, Xiaomin; Greb, Thomas; Alim, Karen
- Author affiliation:
- Technical University of Munich: Höfler, Mathias; Alim, Karen
Center for Organismal Studies, Heidelberg University, Germany: Liu, Xiaomin; Greb, Thomas - Publisher:
- TUM
- Identifier:
- doi:10.14459/2024mp1741765
- End date of data production:
- 02.05.2024
- Subject area:
- BIO Biowissenschaften; PHY Physik
- Resource type:
- Experimente und Beobachtungen / experiments and observations; Simulationen / simulations
- Other resource types:
- Software and applications
- Data type:
- mehrdimensionale Visualisierungen oder Modelle / models; Tabellen / tables; Programme und Anwendungen / software and applications
- Description:
- The experimental data comprises raw images of biological samples as well as raw data extracted from these.
The simulation software contains the sourcecode used to produce simulation results of this work. It consists of our C++ code of the core functionalities, including scripts used for generating the data in the publication and a simple example of how to build a simple growth simulation. Therein we also have a README file, detailling about requirements and compilation. - Method of data assessment:
- Experimental data: Experimental data was obtained by means of confocal microscopy (Nikon A1 confocal microscope with 25x water immersion objective and Leica Stellaris 8 confocal microscope with 20x air objective and 63x water objective) and data was analyzed, using the softwares PlantSeg, MorphographX and FIJI
Simulation data: The code was written both in MacOSX and Ubuntu, using the IDEs Eclipse and Visual Studio Code. The simulation executables were compiled in both MacOSX and Ubuntu using g+... » - Links:
- This dataset relates to the publication: https://doi.org/10.1016/j.cub.2024.10.046
- Key words:
- Plant development; cell growth; cell division; mechanical stress
- Technical remarks:
- View and download (2,47 GB total, 219 Files)
The data server also offers downloads with FTP
The data server also offers downloads with rsync (password m1741765):
rsync rsync://m1741765@dataserv.ub.tum.de/m1741765/ - Language:
- de
- Other rights:
- MIT License (refer to "LICENSE" file in the datasheet)
BibTeX