Login
- Title:
Software for simulation in publication: Auxin-mediated stress relaxation in pericycle and endoderm remodelling drive lateral root initiation
- Document type:
- Forschungsdaten
- Publication date:
- 28.06.2024
- Responsible:
- Alim, Karen
- Authors:
- D. Ramos, João Rafael; Alim, Karen; Maizel, Alexis
- Author affiliation:
Technical University of Munich: D. Ramos, João Rafael; Alim, Karen Centre for Organismal Studies: Maizel, Alexis (alexis.maizel@cos.uni-heidelberg.de)- Publisher:
- TUM
- Identifier:
- doi:10.14459/2024mp1740104
- End date of data production:
- 30.11.2023
- Subject area:
- BIO Biowissenschaften; PHY Physik
- Other subject areas:
- Data analysis code
- Resource type:
- Simulationen / simulations; Textdokumente / text documents
- Data type:
- mehrdimensionale Visualisierungen oder Modelle / models; Programme und Anwendungen / software and applications
- Description:
- The dataset contains the code necessary for the simulations in this work, and associated files. It contains, specifically, the package wrapping our C++ code with the core functionality of the simulated object. Python script examples of how to build the simulation. The actual scripts and lattices used for the publication in question. Therein we also have a README file detailing how to install this package and all requirements, along with additional documentation.
- Method of data assessment:
- The code was written both in MacOSX and Ubuntu, using general purpose IDEs such as Visual Studio Code and Neovim. The simulation executables were compiled in Ubuntu using gcc and swig, as well as other required libraries, such as GSL and NLopt. Simulations ran in Ubuntu with the processor 11th Gen Intel® Core™ i7-11800H @ 2.30GHz × 16 and with 16 GB of RAM.
- Links:
- This dataset relates to the publication: https://www.sciencedirect.com/science/article/pii/S0006349524004144
- Key words:
- Plant Development ; Intercellular Coordination ; Auxin Signaling ; Mechanical Feedback ; Lateral Root Initiation
- Technical remarks:
- View and download (33 MB total, 2217 Files)
The data server also offers downloads with FTP
The data server also offers downloads with rsync (password m1740104):
rsync rsync://m1740104@dataserv.ub.tum.de/m1740104/ - Language:
- en
- Other rights:
- MIT License (refer to "LICENSE" file in the dataset)
BibTeX