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- Titel:
Software for simulation in publication: Auxin-mediated stress relaxation in pericycle and endoderm remodelling drive lateral root initiation
- Dokumenttyp:
- Forschungsdaten
- Veröffentlichungsdatum:
- 28.06.2024
- Verantwortlich:
- Alim, Karen
- Autorinnen / Autoren:
- D. Ramos, João Rafael; Alim, Karen; Maizel, Alexis
- Institutionszugehörigkeit:
Technical University of Munich: D. Ramos, João Rafael; Alim, Karen Centre for Organismal Studies: Maizel, Alexis (alexis.maizel@cos.uni-heidelberg.de)- Herausgeber:
- TUM
- Identifikator:
- doi:10.14459/2024mp1740104
- Enddatum der Datenerzeugung:
- 30.11.2023
- Fachgebiet:
- BIO Biowissenschaften; PHY Physik
- zusätzliche Fachgebiete:
- Data analysis code
- Quellen der Daten:
- Simulationen / simulations; Textdokumente / text documents
- Datentyp:
- mehrdimensionale Visualisierungen oder Modelle / models; Programme und Anwendungen / software and applications
- Methode der Datenerhebung:
- The code was written both in MacOSX and Ubuntu, using general purpose IDEs such as Visual Studio Code and Neovim. The simulation executables were compiled in Ubuntu using gcc and swig, as well as other required libraries, such as GSL and NLopt. Simulations ran in Ubuntu with the processor 11th Gen Intel® Core™ i7-11800H @ 2.30GHz × 16 and with 16 GB of RAM.
- Beschreibung:
- The dataset contains the code necessary for the simulations in this work, and associated files. It contains, specifically, the package wrapping our C++ code with the core functionality of the simulated object. Python script examples of how to build the simulation. The actual scripts and lattices used for the publication in question. Therein we also have a README file detailing how to install this package and all requirements, along with additional documentation.
- Links:
- This dataset relates to the publication: https://www.sciencedirect.com/science/article/pii/S0006349524004144
- Schlagworte:
- Plant Development ; Intercellular Coordination ; Auxin Signaling ; Mechanical Feedback ; Lateral Root Initiation
- Technische Hinweise:
- View and download (33 MB total, 2217 Files)
The data server also offers downloads with FTP
The data server also offers downloads with rsync (password m1740104):
rsync rsync://m1740104@dataserv.ub.tum.de/m1740104/ - Sprache:
- en
- Andere Rechte:
- MIT License (refer to "LICENSE" file in the dataset)
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