Hackl, Lena Maria;Fenn, Amit;Louadi, Zakaria;Baumbach, Jan;Kacprowski, Tim;List, Markus;Tsoy, Olga
Alternative splicing impacts microRNA regulation within coding regions
NAR Genomics and Bioinformatics
2023
5
3

Galindez, Gihanna;List, Markus;Baumbach, Jan;Völker, Uwe;Mäder, Ulrike;Blumenthal, David B;Kacprowski, Tim
Inference of differential gene regulatory networks using boosted differential trees
Bioinformatics Advances
2024

Merotto, Lorenzo;Sturm, Gregor;Dietrich, Alexander;List, Markus;Finotello, Francesca
Making mouse transcriptomics deconvolution accessible with immunedeconv
Bioinformatics Advances
2024
4
1

Bernett, Judith;Blumenthal, David B;List, Markus
Cracking the black box of deep sequence-based protein–protein interaction prediction
Briefings in Bioinformatics
2024
25
2

Matchado, Monica Steffi;Rühlemann, Malte;Reitmeier, Sandra;Kacprowski, Tim;Frost, Fabian;Haller, Dirk;Baumbach, Jan;List, Markus
On the limits of 16S rRNA gene-based metagenome prediction and functional profiling
Microbial Genomics
2024
10
2

Hoffmann, Markus;Willruth, Lina-Liv;Dietrich, Alexander;Lee, Hye Kyung;Knabl, Ludwig;Trummer, Nico;Baumbach, Jan;Furth, Priscilla A.;Hennighausen, Lothar;List, Markus
Blood transcriptomics analysis offers insights into variant-specific immune response to SARS-CoV-2
Scientific Reports
2024
14
1

Matschinske, Julian;Späth, Julian;Bakhtiari, Mohammad;Probul, Niklas;Kazemi Majdabadi, Mohammad Mahdi;Nasirigerdeh, Reza;Torkzadehmahani, Reihaneh;Hartebrodt, Anne;Orban, Balazs-Attila;Fejér, Sándor-József;Zolotareva, Olga;Das, Supratim;Baumbach, Linda;Pauling, Josch K;Tomašević, Olivera;Bihari, Béla;Bloice, Marcus;Donner, Nina C;Fdhila, Walid;Frisch, Tobias;Hauschild, Anne-Christin;Heider, Dominik;Holzinger, Andreas;Hötzendorfer, Walter;Hospes, Jan;Kacprowski, Tim;Kastelitz, Markus;List, Markus;Mayer, Rudolf;Moga, Mónika;Müller, Heimo;Pustozerova, Anastasia;Röttger, Richard;Saak, Christina C;Saranti, Anna;Schmidt, Harald H H W;Tschohl, Christof;Wenke, Nina K;Baumbach, Jan
The FeatureCloud Platform for Federated Learning in Biomedicine: Unified Approach
Journal of Medical Internet Research
2023
25
e42621

Schmidt, Florian;List, Markus;Cukuroglu, Engin;Köhler, Sebastian;Göke, Jonathan;Schulz, Marcel H
An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets
Bioinformatics
2018
34
17
i908-i916

Sonja M. Kessler, Kevan Hosseini, Usama Khamis Hussein, Kyoung Min Kim, Markus List, Christina S. Schultheiß, Marcel H. Schulz, Stephan Laggai, Kyu Yun Jang, Alexandra K. Kiemer
Hepatocellular Carcinoma and Nuclear Paraspeckles: Induction in Chemoresistance and Prediction for Poor Survival
Cellular Physiology and Biochemistry
2019
52
4
787-801

Sturm, Gregor;Finotello, Francesca;Petitprez, Florent;Zhang, Jitao David;Baumbach, Jan;Fridman, Wolf H;List, Markus;Aneichyk, Tatsiana
Comprehensive evaluation of transcriptome-based cell-type quantification methods for immuno-oncology
Bioinformatics
2019
35
14
i436-i445