Lund, Jesper;Tan, Qihua;Baumbach, Jan
Online Interactive Microbial Classification and Geospatial Distributional Analysis Using BioAtlas
Methods in Molecular Biology
Springer New York
2018

Frisch, Tobias;Gøttcke, Jonatan;Röttger, Richard;Tan, Qihua;Baumbach, Jan
DiMmer: Discovery of Differentially Methylated Regions in Epigenome-Wide Association Study (EWAS) Data
Methods in Molecular Biology
Springer New York
2018

Alcaraz, Nicolas;Hartebrodt, Anne;List, Markus
De Novo Pathway Enrichment with KeyPathwayMiner
Methods in Molecular Biology
Springer US
2019

List, Markus;Alcaraz, Nicolas;Batra, Richa
De Novo Pathway-Based Classification of Breast Cancer Subtypes
Methods in Molecular Biology
Springer US
2019

Sturm, Gregor;Finotello, Francesca;List, Markus
Immunedeconv: An R Package for Unified Access to Computational Methods for Estimating Immune Cell Fractions from Bulk RNA-Sequencing Data
Bioinformatics for Cancer Immunotherapy
Springer US
2020

Sturm, Gregor;Finotello, Francesca;List, Markus
In Silico Cell-Type Deconvolution Methods in Cancer Immunotherapy
Bioinformatics for Cancer Immunotherapy
Springer US
2020

Lazareva, Olga;Lautizi, Manuela;Fenn, Amit;List, Markus;Kacprowski, Tim;Baumbach, Jan
Multi-Omics Analysis in a Network Context
Systems Medicine
Elsevier
2021

Baumbach, Jan;Brinkrolf, Karina;Wittkop, Tobias;Tauch, Andreas;Rahmann, Sven
CoryneRegNet 2: An Integrative Bioinformatics Approach for Reconstruction and Comparison of Transcriptional Regulatory Networks in Prokaryotes
Journal of Integrative Bioinformatics
2006
3
2
1-13

Rahmann, Sven;Wittkop, Tobias;Baumbach, Jan;Martin, Marcel;Truß, Anke;Böcker, Sebastian
EXACT AND HEURISTIC ALGORITHMS FOR WEIGHTED CLUSTER EDITING
Computational Systems Bioinformatics
PUBLISHED BY IMPERIAL COLLEGE PRESS AND DISTRIBUTED BY WORLD SCIENTIFIC PUBLISHING CO.
2007

Baumbach, Jan;Bunkowski, Alexander;Lange, Sita;Oberwahrenbrock, Timm;Kleinbölting, Nils;Rahmann, Sven;Baumbach, Jörg Ingo
IMS2 – An integrated medical software system for early lung cancer detection using ion mobility spectrometry data of human breath
Journal of Integrative Bioinformatics
2007
4
3
186-197