Sheu, Sheh-Yi; Schlag, E. W.; Selzle, H. L.; Yang, Dah-Yen
Title:
Molecular Dynamics of Hydrogen Bonds in Protein-D2O: The Solvent Isotope Effect
Abstract:
We suggest that the H-bond in proteins not only mirrors the motion of hydrogen in its own atomistic setting but also finds its origin in the collective environment of the hydrogen bond in a global lattice of surrounding H2O mols. This water lattice is being perturbed in its optimal entropic configuration by the motion of the H-bond. Furthermore, bonding interaction with the lattice drop the H-bond energy from some 5 kcal/mol for the pure protein in the absence of H2O, to some 1.6 kcal/mol in the presence of the H2O medium. This low value here is detd. in a computer expt. involving MD calcns. and is a value close to the generally accepted value for biol. systems. In accordance with these computer expts. under ambient conditions, the H-bond energy is seriously depressed, hence confirming the subtle effect of the H2O medium directly interacting with the H-bond and permitting a strong fluxional behavior. Furthermore, water produces a very large change in the entropy of activation due to the hydrogen bond breakage, which affects the rate by as much as 2 orders of magnitude. We also observe that there is an entire ensemble of H-bond structures, rather than a single transition state, all of which contribute to this H-bond. Here the model is tested by changing to D2O as the surrounding medium resulting in a substantial solvent isotope effect. This demonstrates the important influence of the environment on the individual hydrogen bond. [on SciFinder(R)] «
We suggest that the H-bond in proteins not only mirrors the motion of hydrogen in its own atomistic setting but also finds its origin in the collective environment of the hydrogen bond in a global lattice of surrounding H2O mols. This water lattice is being perturbed in its optimal entropic configuration by the motion of the H-bond. Furthermore, bonding interaction with the lattice drop the H-bond energy from some 5 kcal/mol for the pure protein in the absence of H2O, to some 1.6 kcal/mol in the... »
Keywords:
Isotope effect (deuterium mol. dynamics of hydrogen bonds in protein-D2O and the solvent isotope effect) Activation entropy Hydrogen bond Molecular dynamics (mol. dynamics of hydrogen bonds in protein-D2O and the solvent isotope effect) Proteins Role: BSU (Biological study, unclassified), PRP (Properties), BIOL (Biological study) (mol. dynamics of hydrogen bonds in protein-D2O and the solvent isotope effect) mol dynamics hydrogen bond protein water deuterium isotope effect
Congress title:
CAN 148:208556 6-3 General Biochemistry Department of Life Sciences, National Yang-Ming University, Taipei, Taiwan. Journal 1089-5639 7789-20-0 (Water-d2) Role: BSU (Biological study, unclassified), PRP (Properties), BIOL (Biological study) (mol. dynamics of hydrogen bonds in protein-D2O and the solvent isotope effect)