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Document type:
Zeitschriftenaufsatz
Author(s):
Verbruggen, Steven; Ndah, Elvis; Van Criekinge, Wim; Gessulat, Siegfried; Kuster, Bernhard; Wilhelm, Mathias; Van Damme, Petra; Menschaert, Gerben
Title:
PROTEOFORMER 2.0: Further Developments in the Ribosome Profiling-assisted Proteogenomic Hunt for New Proteoforms
Abstract:
PROTEOFORMER is a pipeline that enables the automated processing of data derived from ribosome profiling (RIBO-seq, i.e. the sequencing of ribosome-protected mRNA fragments). As such, genome-wide ribosome occupancies lead to the delineation of data-specific translation product candidates and these can improve the mass spectrometry-based identification. Since its first publication, different upgrades, new features and extensions have been added to the PROTEOFORMER pipeline. Some of the most impor...    »
Journal title:
Molecular & Cellular Proteomics
Year:
2019
Journal volume:
18
Journal issue:
8
Pages contribution:
S126-S140
Publisher:
Elsevier BV
E-ISSN:
1535-9476
Date of publication:
01.08.2019
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