Zhu, Chengsheng;Delmont, Tom O.;Vogel, Timothy M.;Bromberg, Yana
Functional Basis of Microorganism Classification
PLOS Computational Biology
2015
11
8
e1004472

Walker, Alejandro R.;Grimes, Tyler L.;Datta, Somnath;Datta, Susmita
Unraveling bacterial fingerprints of city subways from microbiome 16S gene profiles
Biology Direct
2018
13
1

Bromberg, Yana;Hahn, Matthew W.;Radivojac, Predrag
Computational approaches to understanding the evolution of molecular function
Biocomputing 2017
WORLD SCIENTIFIC
2016

Goldberg, Tatyana;Rost, Burkhard;Bromberg, Yana
Computational prediction shines light on type III secretion origins
Scientific Reports
2016
6
1

Miller, Maximilian;Zhu, Chengsheng;Bromberg, Yana
clubber: removing the bioinformatics bottleneck in big data analyses
Journal of Integrative Bioinformatics
2017
14
2

Zhu, Chengsheng;Miller, Maximilian;Marpaka, Srinayani;Vaysberg, Pavel;Rühlemann, Malte C;Wu, Guojun;Heinsen, Femke-Anouska;Tempel, Marie;Zhao, Liping;Lieb, Wolfgang;Franke, Andre;Bromberg, Yana
Functional sequencing read annotation for high precision microbiome analysis
Nucleic Acids Research
2017
46
4
e23-e23

Zhu, Chengsheng;Mahlich, Yannick;Miller, Maximilian;Bromberg, Yana
fusionDB: assessing microbial diversity and environmental preferences via functional similarity networks
Nucleic Acids Research
2017
46
D1
D535-D541

Mahlich, Yannick;Steinegger, Martin;Rost, Burkhard;Bromberg, Yana
HFSP: high speed homology-driven function annotation of proteins
Bioinformatics
2018
34
13
i304-i312