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A. Taudt, M. A. Nguyen, M. Heinig, F. Johannes, M. Colomé-Tatché
chromstaR: Tracking combinatorial chromatin state dynamics in space and time.
2016

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L. Morgado, R. C. Jansen, F. Johannes
Learning sequence patterns of AGO-sRNA affinity from high-throughput sequencing libraries to improve in silico functional small RNA detection and classification in plants
2017

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I. Kakoulidou, R. S. Piecyk, R. C. Meyer, M. Kuhlmann, C. Gutjahr, T. Altmann, F. Johannes
Parental pericentromeric methylation status drives methylome remodelling and heterosis in epigenetic hybrids
2022

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T. Sellinger, F. Johannes, A. Tellier,
Improved inference of population histories by integrating genomic and epigenomic data
2023

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Ricci, William A.;Lu, Zefu;Ji, Lexiang;Marand, Alexandre P.;Ethridge, Christina L.;Murphy, Nathalie G.;Noshay, Jaclyn M.;Galli, Mary;Mejía-Guerra, María Katherine;Colomé-Tatché, Maria;Johannes, Frank;Rowley, M. Jordan;Corces, Victor G.;Zhai, Jixian;Scanlon, Michael J.;Buckler, Edward S.;Gallavotti, Andrea;Springer, Nathan M.;Schmitz, Robert J.;Zhang, Xiaoyu
Widespread long-range cis-regulatory elements in the maize genome
Nature Plants
2019
5
12
1237-1249

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Colomé-Tatché, Maria;Johannes, Frank
Signatures of Dobzhansky–Muller Incompatibilities in the Genomes of Recombinant Inbred Lines
Genetics
2015
202
2
825-841

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Taudt, Aaron;Roquis, David;Vidalis, Amaryllis;Wardenaar, René;Johannes, Frank;Colomé-Tatché, Maria
METHimpute: imputation-guided construction of complete methylomes from WGBS data
BMC Genomics
2018
19
1

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Kooke, Rik;Morgado, Lionel;Becker, Frank;van Eekelen, Henriëtte;Hazarika, Rashmi;Zheng, Qunfeng;de Vos, Ric C.H.;Johannes, Frank;Keurentjes, Joost J.B.
Epigenetic mapping of the Arabidopsis metabolome reveals mediators of the epigenotype-phenotype map
Genome Research
2018
29
1
96-106

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Furci, Leonardo;Jain, Ritushree;Stassen, Joost;Berkowitz, Oliver;Whelan, James;Roquis, David;Baillet, Victoire;Colot, Vincent;Johannes, Frank;Ton, Jurriaan
Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis
eLife
2019
8

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Johannes, Frank
DNA methylation makes mutational history
Nature Plants
2019
5
8
772-773